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1. Castrignanò T, Talamo IG, Grillo G, Licciulli F, Gisel A, Liuni S, Mignone F, Pesole G CSTgrid: a high performance environment for searching "Conserved Sequence Tags" Meeting: BITS 2005 - Year: 2005 Full text in a new tab Topic: Unspecified Abstract: The explosive growth of the biological data, stimulated by genome projects, has generated a parallel development of efficient computational approaches suitable for several biological research projects. In this area the need of high performance computing is growing, though usually not affordable by computational resources of a single research laboratory. Grid computing addresses this problem by coordinating and unificating several computational resources. To face the problem of searching "Conserved Sequence Tags" (CSTs) between an input DNA sequence, and several whole model genomes a grid framework can provide high performance, high availability and can fairly handle hundreds of concurrent request. Because the size of several whole genomes now exceed the memory capacity of a single machine, it is necessary to spread the search across multiple distributed working hosts to achieve high performance. This also improves the high availability, since the redundancy of the services increases the tolerance to both machine and network failures. This system also guarantees that the same services can be completed by many machines, reaching the ability to perform more requests that a single machine can handle. |
2. De Sario G, Tulipano A, Gisel A engineDB: a repository of functional analogue gene products Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Databases, Ontologies, Tools and Applications Abstract: Missing |
3. Donvito G, Di Serio F, Maggi G, Gisel A Emboss on gLite-Grid Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Databases, Ontologies, Tools and Applications Abstract: Missing |
4. Pannarale P, Scioscia G, Rubino F, Leo P, Pappadà G, D'Elia D, De Caro G, Gisel A, Grillo G, Vicario S, Mulè G, Susca A, Catalano D, Licciulli F Social Database for Biodiversity Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Biological Databases and Biobanks Abstract: Missing |
5. Sbisà E, Catalano D, Gisel A, Grillo G, Licciulli F, Turi A, Liuni S, Pesole G, De Grassi A, Caratozzolo MF, D'Erchia AM, Navarro B, Tullo A, Saccone C p53FamTaG : a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea Abstract: Missing |
6. Tulipano A, Marangi C, Angelini L, De Sario G, Maggi G, Gisel A Chaotic map clustering on large mixed microarray data sets: modularity and coupled two-ways Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Novel methodologies, algorithms and tools Abstract: Missing |
7. Tulipano A, Marangi C, Angelini L, Pellicoro M, Donvito G, Maggi G, Gisel A Genes clustering on large, mixed microarray data sets Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Microarray design and data analysis Abstract: Missing |
8. Tulipano A, Navarro B, Di Serio F, Flores R, Gisel A Sequence analysis of deep sequencing data of viroid-derived small RNAs in plants Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: New tools for NGS Abstract: Missing |